CHEM 524 -- Course Outline (Part 13)—2005 revision--minor

IX.        Molecular Spectroscopy (Chap. 12 -- read)

A.        Transition between states -- characterized by nuclear and electronic motion (source of energy regime)

            Degrees of freedom—M-nucleii, n-electronsà(3m+3n), describe by state eqn.

            Transition: DE = hn =EiEj where i,j are real states

B.        Types of motion - leads to differentiation of spectroscopy types

            Translation not quantized—continuous distribution of energies

1.         Rotation (motion of molecule as whole) -- sharp, low energy (m-wave)

                        --quantized angular momentum (conserved)  YJM where J=0,1,2,3. . . , M=0, ±1, ±2. . ±J

                        EJ = BJ(J+1) [+ K2(A-B) ]                 B = (h/8p2c) (1/ I)    I = S mri2

-- bigger heavier molecules, lower B and DEJ

                                    selection rules: DJ = ±1, 0, [DK = ±1, 0 ]    [Raman, DJ = ±2, ±1, 0]

                        Thermally many levels populated:  (2J+1)exp(-BJ(J+1)/kT)

                        -- not analytically useful as pure rotation transition—transitions too weak,

 but impact all states—vapor phase see contributions

2.         Vibration - internal motion (nucleii move to each other on a potential surface resulting from electron energy variation with nuclear postion) – slides introducing IR/Raman of proteins

                        -- measure absorption spectra in the infrared (or with Raman scattering,ns=n0±nvib)

                        --states describe nuclear degrees of freedom: (3n-6) unless linear (3n-5)

                        a. Characteristic frequencies -- property of atoms/bonds –diatomic: n = (2p)-1(k/m)1/2

                                     k - curvature of potential surface - typically strong bond, bigger k

                                    --k increase, frequency increase (eg. C=C ~1600 cm-1, and C=C ~2200 cm-1)

                                    --mass increase, frequency decrease (eg. HCl ~2800 cm-1, DCl ~2100 cm-1)

                        b. Selection rules (harmonic source, violated when anharmonic)

                                         Dni = ±1 , Dnj = 0       i =/ j so DEi = hni

                        fundamental transitions in 100-4000 cm-1 range, lightest = highest (H2)

3.         Vapor -- rotation-vibration transitions combine (DJ = 01), can get complex (NH3)

                        condense phase --broaden vibrational bands (couple to matrix--libration, phonons)

4.         Analytical -- Vibrational spectra useful for qualitative discrimination (examples, nitrobenzene, ethers, Raman-IR complementary, )

                        Quantitative:   S/N and concentration can be limiting factors

                        Raman issue -- internal standard needed

C.        Electronic Transitions

1.         To bound state -- include. rot. and vib./ unbound poorly defined

                                                vertical transition most intense (no nuclear change) [Franck-Condon]

2.         Intensity depend on types (allowed or forbidden)

                        organic --        closed shell--in VUV (radical lower Energy)

                                    --          p-system in UV, dominant utility--arenes, heteroaromatics, Azines

                                    --          non-bonded electron pairs, heavy hetero-atoms (lower energy)

                        Transition metal complexes -- open shell

                                    d-d -- vibronic allowed, weak but visible/characteristic

                                    CT & d-p -- intense/higher energy

                                    f-f & spin change -- very weak

D.        Measurement: (Appendix E)

1.         Beer-Lambert Law               

                                                   (esu-cm)2

2.         Einstein coefficient: absorption = emission (stimulated) ~ emission (spontaneous)

                        Bij = 8p3D/3h2gI        Bji = gi/gj Bij      oscillator strength: fij = 2.5x10-34 Bij/lm

3.         Jablonski diagram -- follow the energy

                        Vib. Relax—energy from one vibrational level to another or to “heat”, i.e. general K.E. of surroundings (via collision)

                        IC—move energy to another electronic state without significant loss (DS=0),

ISC—move energy to triplet manifold from singlets (or vice versa) with little loss

                        Fluorescence –radiative relaxation of excited state (DS=0)

Phosphorescence—radiative relaxation of state with spin change (typical T1àS0)

                        Quantum Yield—ratio of photons out to photons in or rates of processes:

                                    f = kF/kF+knr

                        Lifetimes and Quenching--  kF = 1/t  if fluorescence is only process, but if add quencher, lower quantum yield, shorten lifetime, t, because of competition with quenching

 

Links

Spectroscopy magazine, workbench columns

http://www.spectroscopymag.com/spectroscopy/article/articleList.jsp?categoryId=2942

Spectroscopy now has current happenings in various areas

http://www.spectroscopynow.com/coi/cda/list.cda?catId=2524&type=Link&sort=az&chId=7

Kaiser Optical Raman tutorial

http://www.kosi.com/raman/resources/tutorial/

Akron Organic Molecular spectroscopy unit:

http://ull.chemistry.uakron.edu/analytical/Mol_spec/

UIC’s organic course IR tutorial (Paul Robert Young), UC Boulder lab course and a UK course:

http://chipo.chem.uic.edu/web1/ocol/spec/IR1.htm

http://orgchem.colorado.edu/hndbksupport/irtutor/main.html

http://www.shu.ac.uk/schools/sci/chem/tutorials/molspec/irspec1.htm

General spectroscopy comments from Korean site:

http://elchem.kaist.ac.kr/vt/chem-ed/spec/spectros.htm

 

 

 

Companies

Thermo molec spec—FTIR mostly

http://www.thermo.com/com/cda/category/category_lp/1,2152,312,00.html

Analytik Jena

http://www.analytik-jena.de/e/bu/as/molec/molec.html